Publications
Export 293 results:
Ng, SY., Johnson R, Stanton LW..
2012. Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.. EMBO J.. 31:522–533. Abstract
Djebali, S, Lagarde J, Kapranov P, Lacroix V, Borel C, Mudge JM., Howald C, Foissac S, Ucla C, Chrast J et al..
2012. Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells. PLoS ONE. 7:e28213. Abstract
Derrien, T, Estell, Marco Sola S, Knowles DG., Raineri E, Guigo R, Ribeca P.
2012. Fast computation and applications of genome mappability.. PLoS ONE. 7:e30377. Abstract
Kedzierska, AM., Drton M, Guigo R, Casanellas M.
2011. SPIn: model selection for phylogenetic mixtures via linear invariants.. Molecular biology and evolution. Abstract
Murakami, T, Yang SP, Xie L, Kawano T, Fu D, Mukai A, Bohm C, Chen F, Robertson J, Suzuki H et al..
2011. ALS mutations in FUS cause neuronal dysfunction and death in Caenorhabditis elegans by a dominant gain-of-function mechanism. Hum Mol Genet. Abstract
Silva, LL., Marcet-Houben M, Zerlotini A, Gabaldón T, Oliveira G, Nahum LA..
2011. Evolutionary histories of expanded peptidase families in Schistosoma mansoni.. Mem. Inst. Oswaldo Cruz. 106:864–877. Abstract
Gonzalez-Porta, M, Calvo M, Sammeth M, Guigo R.
2011. Estimation of alternative splicing variability in human populations. Genome research. Abstract
Maxwell, CA., Benítez J, Gómez-Baldó L, Osorio A, Bonifaci N, Fernández-Ramires R, Costes SV., Guinó E, Chen H, Evans GJ. et al..
2011. Interplay between BRCA1 and RHAMM Regulates Epithelial Apicobasal Polarization and May Influence Risk of Breast Cancer. PLoS Biol.. 9:e1001199. Abstract
Mudge, JM., Frankish A, Fernandez-Banet J, Alioto T, Derrien T, Howald C, Reymond A, Guigo R, Hubbard T, Harrow J.
2011. The origins, evolution and functional potential of alternative splicing in vertebrates. Molecular biology and evolution. Abstract
Di Tommaso, P, Moretti S, Xenarios I, Orobitg M, Montanyola A, Chang JM., Taly JF., Notredame C.
2011. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.. Nucleic acids research. Abstract
Bussotti, G, Raineri E, Erb I, Zytnicki M, Wilm A, Beaudoing E, Bucher P, Notredame C.
2011. BlastR–fast and accurate database searches for non-coding RNAs.. Nucleic acids research. Abstract
Pryszcz, LP., Huerta-Cepas J, Gabaldón T.
2011. MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score.. Nucleic Acids Res.. 39:e32. Abstract
Bellucci, M, Agostini F, Masin M, Tartaglia GG.
2011. Predicting protein associations with long noncoding RNAs. Nat. Methods. 8:444–445.
Martin, D, Pantoja C, Miñán AF., Valdes-Quezada C, Moltó E, Matesanz F, Bogdanović O, de la Calle-Mustienes E, Domínguez O, Taher L et al..
2011. Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes. Nat. Struct. Mol. Biol.. 18:708–714. Abstract
Puente, XS., Pinyol M, Quesada V, Conde L, Ordonez GR., Villamor N, Escaramis G, Jares P, Bea S, González-Díaz M et al..
2011. Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia. Nature. Abstract
Baldwin, AJ., Knowles TP., Tartaglia G, Fitzpatrick A, Devlin G, Shammas S, Waudby CA., Mossuto MF., Gras SL., Christodoulou J et al..
2011. Metastability of Native Proteins and the Phenomenon of Amyloid Formation.. Journal of the American Chemical Society. Abstract
Di Tommaso, P, Moretti S, Xenarios I, Orobitg M, Montanyola A, Chang JM., Taly JF., Notredame C.
2011. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.. Nucleic Acids Res.. 39:W13–W17. Abstract
Sánchez, R, Serra F, Tárraga J, Medina I, Carbonell J, Pulido L, de María A, Capella-Gutiérrez S, Huerta-Cepas J, Gabaldón T et al..
2011. Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.. Nucleic Acids Res.. 39 Suppl 2:W470–W474. Abstract
Roetzer, A, Klopf E, Gratz N, Marcet-Houben M, Hiller E, Rupp S, Gabaldón T, Kovarik P, Schüller C.
2011. Regulation of Candida glabrata oxidative stress resistance is adapted to host environment.. FEBS Lett.. 585:319–327. Abstract
Huerta-Cepas, J, Gabaldón T.
2011. Assigning duplication events to relative temporal scales in genome-wide studies.. Bioinformatics. 27:38–45. Abstract
Huerta-Cepas, J, Capella-Gutiérrez S, Pryszcz LP., Denisov I, Kormes D, Marcet-Houben M, Gabaldón T.
2011. PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.. Nucleic Acids Res.. 39:D556–D560. Abstract
Olzscha, H, Schermann SM., Woerner AC., Pinkert S, Hecht MH., Tartaglia GG., Vendruscolo M, Hayer-Hartl M, Hartl FU., Vabulas RM..
2011. Amyloid-like Aggregates Sequester Numerous Metastable Proteins with Essential Cellular Functions.. Cell. Abstract
Marcet-Houben, M, Gabaldón T.
2011. TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees.. Nucleic acids research. Abstract
Derrien, T, Guigó R.
2011. [Long non-coding RNAs with enhancerlike function in human cells.]. Medecine sciences : M/S. 27:359–361.
Orom, UA., Derrien T, Guigo R, Shiekhattar R.
2011. Long Noncoding RNAs as Enhancers of Gene Expression. Cold Spring Harbor symposia on quantitative biology. Abstract
