Publications

2012

Ng, SY., Johnson R, Stanton LW..  2012.  Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.. EMBO J.. 31:522–533. Abstract
Pubmed
Derrien, T, Estell, Marco Sola S, Knowles DG., Raineri E, Guigo R, Ribeca P.  2012.  Fast computation and applications of genome mappability.. PLoS ONE. 7:e30377. Abstract
Pubmed
Djebali, S, Lagarde J, Kapranov P, Lacroix V, Borel C, Mudge JM., Howald C, Foissac S, Ucla C, Chrast J et al..  2012.  Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells. PLoS ONE. 7:e28213. Abstract
Pubmed

2011

Consortium, ENCODE P, Myers RM., Stamatoyannopoulos J, Snyder M, Dunham I, Hardison RC., Bernstein BE., Gingeras TR., Kent WJ., Birney E et al..  2011.  A user's guide to the encyclopedia of DNA elements (ENCODE).. PLoS Biol.. 9:e1001046. Abstract
Pubmed
Silva, LL., Marcet-Houben M, Zerlotini A, Gabaldón T, Oliveira G, Nahum LA..  2011.  Evolutionary histories of expanded peptidase families in Schistosoma mansoni.. Mem. Inst. Oswaldo Cruz. 106:864–877. Abstract
application/pdf iconLopezSilva_Schistosoma_Peptidases_MIOC_2011.pdf
 Pubmed
application/pdf iconLopezSilva_Schistosoma_Peptidases_MIOC_2011.pdf
Agostini, F, Vendruscolo M, Tartaglia GG.  2011.  Sequence-based prediction of protein solubility. Journal of Molecular Biology.
Murakami, T, Yang SP, Xie L, Kawano T, Fu D, Mukai A, Bohm C, Chen F, Robertson J, Suzuki H et al..  2011.  ALS mutations in FUS cause neuronal dysfunction and death in Caenorhabditis elegans by a dominant gain-of-function mechanism. Hum Mol Genet. Abstract
Pubmed
Maxwell, CA., Benítez J, Gómez-Baldó L, Osorio A, Bonifaci N, Fernández-Ramires R, Costes SV., Guinó E, Chen H, Evans GJ. et al..  2011.  Interplay between BRCA1 and RHAMM Regulates Epithelial Apicobasal Polarization and May Influence Risk of Breast Cancer. PLoS Biol.. 9:e1001199. Abstract
Pubmed
Gonzalez-Porta, M, Calvo M, Sammeth M, Guigo R.  2011.  Estimation of alternative splicing variability in human populations. Genome research. Abstract
Pubmed
Kedzierska, AM., Drton M, Guigo R, Casanellas M.  2011.  SPIn: model selection for phylogenetic mixtures via linear invariants.. Molecular biology and evolution. Abstract
Pubmed