Publications

2009

Makrythanasis, P, Kapranov P, Bartoloni L, Reymond A, Deutsch S, Guigó R, Denoeud F, Drenkow J, Rossier C, Ariani F et al..  2009.  Variation in novel exons (RACEfrags) of the MECP2 gene in Rett syndrome patients and controls.. Hum. Mutat.. 30:E866–E879. Abstract
Pubmed

2008

Djebali, S, Kapranov P, Foissac S, Lagarde J, Reymond A, Ucla C, Wyss C, Drenkow J, Dumais E, Murray RR. et al..  2008.  Efficient targeted transcript discovery via array-based normalization of RACE libraries.. Nat. Methods. 5:629–635. Abstract
Pubmed

2007

Tress, ML., Martelli PL., Frankish A, Reeves GA., Wesselink JJ., Yeats C, Olason PI., Albrecht M, Hegyi H, Giorgetti A et al..  2007.  The implications of alternative splicing in the ENCODE protein complement.. Proc. Natl. Acad. Sci. U.S.A.. 104:5495–5500. Abstract
Pubmed
Zheng, D, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW., Lu Y, Denoeud F, Antonarakis SE., Snyder M et al..  2007.  Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution.. Genome Res.. 17:839–851. Abstract
Pubmed
Washietl, S, Pedersen JS., Korbel JO., Stocsits C, Gruber AR., Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A et al..  2007.  Structured RNAs in the ENCODE selected regions of the human genome.. Genome Res.. 17:852–864. Abstract
Pubmed
Denoeud, F, Kapranov P, Ucla C, Frankish A, Castelo R, Drenkow J, Lagarde J, Alioto T, Manzano C, Chrast J et al..  2007.  Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions.. Genome Res.. 17:746–759. Abstract
Pubmed
Consortium, ENCODE P, Birney E, Stamatoyannopoulos JA., Dutta A, Guigó R, Gingeras TR., Margulies EH., Weng Z, Snyder M, Dermitzakis ET. et al..  2007.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.. Nature. 447:799–816. Abstract
Pubmed

2006

Harrow, J, Denoeud F, Frankish A, Reymond A, Chen CK., Chrast J, Lagarde J, Gilbert JG., Storey R, Swarbreck D et al..  2006.  GENCODE: producing a reference annotation for ENCODE.. Genome Biol.. 7 Suppl 1:S4.1–S4.9. Abstract
Pubmed
Guigó, R, Flicek P, Abril JF., Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB., Birney E et al..  2006.  EGASP: the human ENCODE Genome Annotation Assessment Project.. Genome Biol.. 7 Suppl 1:S2.1–S231. Abstract
Pubmed