Publications
2012
Djebali, S, Lagarde J, Kapranov P, Lacroix V, Borel C, Mudge JM., Howald C, Foissac S, Ucla C, Chrast J et al..
2012. Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells. PLoS ONE. 7:e28213. Abstract
Pubmed
2011
Consortium, ENCODE P, Myers RM., Stamatoyannopoulos J, Snyder M, Dunham I, Hardison RC., Bernstein BE., Gingeras TR., Kent WJ., Birney E et al..
2011. A user's guide to the encyclopedia of DNA elements (ENCODE).. PLoS Biol.. 9:e1001046. Abstract
Pubmed
Consortium, ENCODE P, Myers RM., Stamatoyannopoulos J, Snyder M, Dunham I, Hardison RC., Bernstein BE., Gingeras TR., Kent WJ., Birney E et al..
2011. A user's guide to the encyclopedia of DNA elements (ENCODE).. PLoS Biol.. 9:e1001046. Abstract
Pubmed
2009
Makrythanasis, P, Kapranov P, Bartoloni L, Reymond A, Deutsch S, Guigó R, Denoeud F, Drenkow J, Rossier C, Ariani F et al..
2009. Variation in novel exons (RACEfrags) of the MECP2 gene in Rett syndrome patients and controls.. Hum. Mutat.. 30:E866–E879. Abstract
Pubmed
2008
Djebali, S, Kapranov P, Foissac S, Lagarde J, Reymond A, Ucla C, Wyss C, Drenkow J, Dumais E, Murray RR. et al..
2008. Efficient targeted transcript discovery via array-based normalization of RACE libraries.. Nat. Methods. 5:629–635. Abstract
Pubmed
2007
Zheng, D, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW., Lu Y, Denoeud F, Antonarakis SE., Snyder M et al..
2007. Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution.. Genome Res.. 17:839–851. Abstract
Pubmed
Denoeud, F, Kapranov P, Ucla C, Frankish A, Castelo R, Drenkow J, Lagarde J, Alioto T, Manzano C, Chrast J et al..
2007. Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions.. Genome Res.. 17:746–759. Abstract
Pubmed
Washietl, S, Pedersen JS., Korbel JO., Stocsits C, Gruber AR., Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A et al..
2007. Structured RNAs in the ENCODE selected regions of the human genome.. Genome Res.. 17:852–864. Abstract
Pubmed
Rozowsky, JS., Newburger D, Sayward F, Wu J, Jordan G, Korbel JO., Nagalakshmi U, Yang J, Zheng D, Guigó R et al..
2007. The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci.. Genome Res.. 17:732–745. Abstract
Pubmed
