Publications

2012

Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M, Dunham I, Kundaje A, Aldred SF, Collins PJ et al..  2012.  An integrated encyclopedia of DNA elements in the human genome. Nature. 489:57–74.
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG et al..  2012.  The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression. Genome Res.. 22:1775–1789.
Erb I, González-Vallinas JR, Bussotti G, Blanco E, Eyras E, Notredame C.  2012.  Use of ChIP-Seq data for the design of a multiple promoter-alignment method.. Nucleic Acids Res.. 40:e52. Abstract
Pubmed

2011

Taly JF, Magis C, Bussotti G, Chang JM, Di Tommaso P, Erb I, Espinosa-Carrasco J, Kemena C, Notredame C.  2011.  Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures.. Nat Protoc. 6:1669–1682. Abstract
Pubmed
Bussotti G, Raineri E, Erb I, Zytnicki M, Wilm A, Beaudoing E, Bucher P, Notredame C.  2011.  BlastR–fast and accurate database searches for non-coding RNAs.. Nucleic Acids Res.. 39:6886–6895. Abstract
Pubmed
Esteve-Codina A, Kofler R, Palmieri N, Bussotti G, Notredame C, Pérez-Enciso M.  2011.  Exploring the gonad transcriptome of two extreme male pigs with RNA-seq.. BMC Genomics. 12:552. Abstract
Pubmed

2010

Coll O, Villalba A, Bussotti G, Notredame C, Gebauer F.  2010.  A novel, noncanonical mechanism of cytoplasmic polyadenylation operates in Drosophila embryogenesis.. Genes Dev.. 24:129–134. Abstract
Pubmed
Orom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, Bussotti G, Lai F, Zytnicki M, Notredame C, Huang Q et al..  2010.  Long Noncoding RNAs with Enhancer-like Function in Human Cells. Cell. 143:46–58. Abstract
Pubmed