Publications

2012

Griebel T, Zacher B, Ribeca P, Raineri E, Lacroix V, Guigó R, Sammeth M.  2012.  Modelling and simulating generic RNA-Seq experiments with the flux simulator. Nucleic Acids Res.. 40:10073–10083. Abstract
Marco-Sola S, Sammeth M, Guigó R, Ribeca P.  2012.  The GEM mapper: fast, accurate and versatile alignment by filtration. Nat. Methods. 9:1185–1188. Abstract
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F et al..  2012.  Landscape of transcription in human cells. Nature. 489:101–108.
Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M, Dunham I, Kundaje A, Aldred SF, Collins PJ et al..  2012.  An integrated encyclopedia of DNA elements in the human genome. Nature. 489:57–74.
Consortium TTG, Institute KDNAR, Sato S, Tabata S, Hirakawa H, Asamizu E, Shirasawa K, Isobe S, Kaneko T, Nakamura Y et al..  2012.  The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 485:635–641. Abstract
Pubmed
Derrien T, Estell, Marco Sola S, Knowles DG, Raineri E, Guigo R, Ribeca P.  2012.  Fast computation and applications of genome mappability.. PLoS ONE. 7:e30377. Abstract
Pubmed
Djebali S, Lagarde J, Kapranov P, Lacroix V, Borel C, Mudge JM, Howald C, Foissac S, Ucla C, Chrast J et al..  2012.  Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells. PLoS ONE. 7:e28213. Abstract
Pubmed