Publications

2012

Silva LL, Marcet-Houben M, Nahum LA, Zerlotini A, Gabaldón T, Oliveira G.  2012.  The Schistosoma mansoni phylome: using evolutionary genomics to gain insight into a parasite's biology.. BMC Genomics. 13:617. Abstract
application/pdf iconSilva_et_al_Schistosoma_phylome_BMCGenomics_2012.pdf
 Pubmed
application/pdf iconSilva_et_al_Schistosoma_phylome_BMCGenomics_2012.pdf
Marcet-Houben M, Ballester AR, de la Fuente B, Harries E, Marcos JF, González-Candelas L, Gabaldón T.  2012.  Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus.. BMC Genomics. 13:646. Abstract
Pubmed
Piškur J, Ling Z, Marcet-Houben M, Ishchuk OP, Aerts A, LaButti K, Copeland A, Lindquist E, Barry K, Compagno C et al..  2012.  The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties.. Int. J. Food Microbiol.. 157:202–209. Abstract
application/pdf iconPiskur_Dekkera_Genome_paper_IJFM_2012.pdf
application/pdf iconPiskur_Dekkera_Genome_paper_IJFM_2012.pdf
Capella-Gutiérrez S, Marcet-Houben M, Gabaldón T.  2012.  Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi.. BMC Biol.. 10:47. Abstract
application/pdf iconCapella_microsporidia_BMCBiol_2012.pdf
application/pdf iconCapella_microsporidia_BMCBiol_2012.pdf

2011

Silva LL, Marcet-Houben M, Zerlotini A, Gabaldón T, Oliveira G, Nahum LA.  2011.  Evolutionary histories of expanded peptidase families in Schistosoma mansoni.. Mem. Inst. Oswaldo Cruz. 106:864–877. Abstract
application/pdf iconLopezSilva_Schistosoma_Peptidases_MIOC_2011.pdf
 Pubmed
application/pdf iconLopezSilva_Schistosoma_Peptidases_MIOC_2011.pdf
Huerta-Cepas J, Capella-Gutiérrez S, Pryszcz LP, Denisov I, Kormes D, Marcet-Houben M, Gabaldón T.  2011.  PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.. Nucleic Acids Res.. 39:D556–D560. Abstract
Pubmed
Roetzer A, Klopf E, Gratz N, Marcet-Houben M, Hiller E, Rupp S, Gabaldón T, Kovarik P, Schüller C.  2011.  Regulation of Candida glabrata oxidative stress resistance is adapted to host environment.. FEBS Lett.. 585:319–327. Abstract
Pubmed
Marcet-Houben M, Gabaldón T.  2011.  TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees.. Nucleic acids research. Abstract
Pubmed

2010

Huerta-Cepas J, Marcet-Houben M, Pignatelli M, Moya A, Gabaldón T.  2010.  The pea aphid phylome: a complete catalogue of evolutionary histories and arthropod orthology and paralogy relationships for Acyrthosiphon pisum genes.. Insect Mol. Biol.. 19 Suppl 2:13–21. Abstract
application/pdf iconpdf
 Pubmed
application/pdf iconpdf

2009

Marcet-Houben M, Marceddu G, Gabaldón T.  2009.  Phylogenomics of the oxidative phosphorylation in fungi reveals extensive gene duplication followed by functional divergence.. BMC Evol. Biol.. 9:295. Abstract
Pubmed