Publications

2007

Consortium ENCODEP, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET et al..  2007.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.. Nature. 447:799–816. Abstract
Pubmed

2006

Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E et al..  2006.  EGASP: the human ENCODE Genome Annotation Assessment Project.. Genome Biol.. 7 Suppl 1:S2.1–S231. Abstract
Pubmed

2005

Abril JF, Castelo R, Guigó R.  2005.  Comparison of splice sites in mammals and chicken.. Genome Res.. 15:111–119. Abstract
Pubmed

2004

Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE et al..  2004.  Genome sequence of the Brown Norway rat yields insights into mammalian evolution.. Nature. 428:493–521. Abstract
Pubmed

2003

Parra G, Agarwal P, Abril JF, Wiehe T, Fickett JW, Guigó R.  2003.  Comparative gene prediction in human and mouse.. Genome Res.. 13:108–117. Abstract
Pubmed
Abril JF, Guigó R, Wiehe T.  2003.  gff2aplot: Plotting sequence comparisons.. Bioinformatics. 19:2477–2479. Abstract
Pubmed
Guigo R, Dermitzakis ET, Agarwal P, Ponting CP, Parra G, Reymond A, Abril JF, Keibler E, Lyle R, Ucla C et al..  2003.  Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes.. Proc. Natl. Acad. Sci. U.S.A.. 100:1140–1145. Abstract
Pubmed

2002

Glöckner G, Eichinger L, Szafranski K, Pachebat JA, Bankier AT, Dear PH, Lehmann R, Baumgart C, Parra G, Abril JF et al..  2002.  Sequence and analysis of chromosome 2 of Dictyostelium discoideum.. Nature. 418:79–85. Abstract
Pubmed
Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R et al..  2002.  The genome sequence of the malaria mosquito Anopheles gambiae.. Science. 298:129–149. Abstract
Pubmed
Consortium MGS, Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M et al..  2002.  Initial sequencing and comparative analysis of the mouse genome.. Nature. 420:520–562. Abstract
Pubmed