Publications
Export 313 results:
Frenkel-Morgenstern, M, Lacroix V, Ezkurdia I, Levin Y, Gabashvili A, Prilusky J, Del Pozo A, Tress ML, Johnson R, Guigo R et al..
2012. Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts. Genome Res.
Calloni, G, Chen T, Schermann SM, Chang H, Genevaux P, Agostini F, Tartaglia GG, Hayer-Hartl M, Hartl FU.
2012. DnaK Functions as a Central Hub in the E. coli Chaperone Network. Cell Reports.
Speretta, E, Jahn TR, Tartaglia GG, Favrin G, Barros TP, Imarisio S, Lomas DA, Luheshi LM, Crowther DC, Dobson CM.
2012. Expression in Drosophila of Tandem Aβ Peptides Provides Insights Into the Link Between Aggregation and Neurotoxicity. J Biol Chem.
Dessimoz, C, Gabaldón T, Roos DS., Sonnhammer EL., Herrero J, the for Consortium Q O.
2012. Toward community standards in the quest for orthologs.. Bioinformatics (Oxford, England). 28:900–904. Abstract
Ollivier, M, Gabaldón T, Poulain J, Gavory F, Leterme N, Gauthier JP., Legeai F, Tagu D, Simon JC., Rispe C.
2012. Comparison of gene repertoires and patterns of evolutionary rates in eight aphid species that differ by reproductive mode.. Genome Biol Evol. 4:155–167. Abstract
Torrent, M, Di Tommaso P, Pulido D, Nogués MV., Notredame C, Boix E, Andreu D.
2012. AMPA: an automated web server for prediction of protein antimicrobial regions.. Bioinformatics. 28:130–131. Abstract
Ng, SY., Johnson R, Stanton LW..
2012. Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.. EMBO J.. 31:522–533. Abstract
Erb, I, González-Vallinas JR., Bussotti G, Blanco E, Eyras E, Notredame C.
2012. Use of ChIP-Seq data for the design of a multiple promoter-alignment method.. Nucleic Acids Res.. 40:e52. Abstract
Derrien, T, Guigo R, Johnson R.
2012. The Long Non-Coding RNAs: A New (P)layer in the "Dark Matter". Front Genet.. 2(107):1–6. Abstract
Djebali, S, Lagarde J, Kapranov P, Lacroix V, Borel C, Mudge JM., Howald C, Foissac S, Ucla C, Chrast J et al..
2012. Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells. PLoS ONE. 7:e28213. Abstract
Derrien, T, Estell, Marco Sola S, Knowles DG., Raineri E, Guigo R, Ribeca P.
2012. Fast computation and applications of genome mappability.. PLoS ONE. 7:e30377. Abstract
Adams, D, Altucci L, Antonarakis SE, Ballesteros J, Beck S, Bird A, Bock C, Boehm B, Campo E, Caricasole A et al..
2012. BLUEPRINT to decode the epigenetic signature written in blood. Nat. Biotechnol.. 30:224–226.
Lee JH., Wan KL., Mohd-Adnan A., Gabaldón T.
2012. Evolution of the ferritin family in vertebrates. Trends in Evol Biol. 4:e3. Abstract
Mariotti, M, Ridge PG, Zhang Y, Lobanov AV, Pringle TH, Guigo R, Hatfield DL, Gladyshev VN.
2012. Composition and evolution of the vertebrate and Mammalian selenoproteomes. PLoS ONE. 7:e33066.
Bohle, HM., Gabaldón T.
2012. Selection of marker genes using whole-genome DNA polymorphism analysis.. Evol. Bioinform. Online. 8:161–169. Abstract
Chang, JM., Di Tommaso P, Taly JF., Notredame C.
2012. Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee.. BMC Bioinformatics. 13 Suppl 4:S1. Abstract
Arnold, P, Erb I, Pachkov M, Molina N, van Nimwegen E.
2012. MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences. Bioinformatics. 28:487–494.
Bussotti, G, Raineri E, Erb I, Zytnicki M, Wilm A, Beaudoing E, Bucher P, Notredame C.
2011. BlastR–fast and accurate database searches for non-coding RNAs.. Nucleic Acids Res.. 39:6886–6895. Abstract
Kedzierska, AM., Drton M, Guigo R, Casanellas M.
2011. SPIn: model selection for phylogenetic mixtures via linear invariants.. Molecular biology and evolution. Abstract
Murakami, T, Yang SP, Xie L, Kawano T, Fu D, Mukai A, Bohm C, Chen F, Robertson J, Suzuki H et al..
2011. ALS mutations in FUS cause neuronal dysfunction and death in Caenorhabditis elegans by a dominant gain-of-function mechanism. Hum Mol Genet. Abstract
Silva, LL., Marcet-Houben M, Zerlotini A, Gabaldón T, Oliveira G, Nahum LA..
2011. Evolutionary histories of expanded peptidase families in Schistosoma mansoni.. Mem. Inst. Oswaldo Cruz. 106:864–877. Abstract
Gonzalez-Porta, M, Calvo M, Sammeth M, Guigo R.
2011. Estimation of alternative splicing variability in human populations. Genome research. Abstract
Maxwell, CA., Benítez J, Gómez-Baldó L, Osorio A, Bonifaci N, Fernández-Ramires R, Costes SV., Guinó E, Chen H, Evans GJ. et al..
2011. Interplay between BRCA1 and RHAMM Regulates Epithelial Apicobasal Polarization and May Influence Risk of Breast Cancer. PLoS Biol.. 9:e1001199. Abstract
Merhej, V, Notredame C, Royer-Carenzi M, Pontarotti P, Raoult D.
2011. The rhizome of life: the sympatric Rickettsia felis paradigm demonstrates the random transfer of DNA sequences.. Mol. Biol. Evol.. 28:3213–3223. Abstract
