Publications - Evolutionary Genomics
Info about publications
2010
Kondrashov, FA, Kondrashov AS.
2010. Measurements of spontaneous rates of mutations in the recent past and the near future. Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 365:1169–1176.
Pubmed
Innan, H, Kondrashov FA.
2010. The evolution of gene duplications: classifying and distinguishing between models. Nat Rev Genet. 11(2):108.
Pubmed
Kondrashov, AS, Povolotskaya IS, Ivankov DN, Kondrashov FA.
2010. Rate of sequence divergence under constant selection. Biology Direct. 5(1) Abstract
2009
Alkalaeva, E, Eliseev B, Ambrogelly A, Vlasov P, Kondrashov FA, Gundllapalli S, Frolova L, Söll D, Kisselev L.
2009. Translation termination in pyrrolysine-utilizing archaea.. FEBS Lett.. 583(21):3460. Abstract
Pubmed
2008
Schmidt, S, Gerasimova A, Kondrashov FA, Adzhubei IA., Adzuhbei IA., Kondrashov AS., Sunyaev S.
2008. Hypermutable non-synonymous sites are under stronger negative selection.. PLoS Genet.. 4:e1000281. Abstract
Pubmed
Assis, R, Kondrashov AS., Koonin EV., Kondrashov FA.
2008. Nested genes and increasing organizational complexity of metazoan genomes.. Trends Genet.. 24:475–478. Abstract
Pubmed
Arkhipov, VY, Koblik EA, Redkin YA, Kondrashov FA.
2008. Birds of the Krasnoye Lake area (South Chukotka). Arch Zool Mus MGU. 49:159-183. Abstract
2007
Plotnikova, OV, Kondrashov FA, Vlasov PK, Grigorenko AP, Ginter EK, Rogaev EI.
2007. Conversion and Compensatory Evolution of the Gamma-crystallin Genes and Identification of a Cataractogenic Mutation that Reverses the Sequence of the Human CRYGD gene to an Ancestral State. Am J Hum Genet. 81:32-43. Abstract
Pubmed
Kondrashov, FA, Gurbich TA, Vlasov PK.
2007. Selection for Functional Uniformity of tuf Duplicates in Gamma-proteobacteria. Trends Genet. 23:215-218. Abstract
Pubmed
Bazykin, GA, Kondrashov FA, Brudno M, Poliakov A, Dubchak I, Kondrashov AS.
2007. Extensive Parallelism in Protein Evolution. Biol Direct. 2:20-20. Abstract
Pubmed
Popadin, K Y, Mamirova LA, Kondrashov FA.
2007. A Manually Curated Database of Tetrapod Mitochondrially Encoded tRNA Sequences and Secondary Structures. BMC Bioinformatics. 8:441-441. Abstract
Pubmed
2006
Kondrashov, FA, Kondrashov AS.
2006. Role of Selection in Fixation of gene Duplications. J Theor Biol. 239:141-151. Abstract
Pubmed
2005
Yampolsky, LY, Kondrashov FA, Kondrashov AS.
2005. Distribution of the Strength of Selection Against Amino acid Replacements in Human Proteins. Hum Mol Genet. 14:3191-3201. Abstract
Pubmed
Kondrashov, FA.
2005. Prediction of Pathogenic Mutations in Mitochondrially Encoded Human tRNAs. Hum Mol Genet. 14:2415-2419. Abstract
Pubmed
2004
Kondrashov, FA, Koonin EV.
2004. A Common Framework for Understanding the Origin of Genetic Dominance and Evolutionary Fates of gene Duplications. Trends Genet. 20:287-290.
Pubmed
Kondrashov, FA, Ogurtsov AY, Kondrashov AS.
2004. Bioinformatical Assay of Human gene Morbidity. Nucleic Acids Res. 32:1731-1737. Abstract
Pubmed
Panchenko, AR, Kondrashov FA, Bryant S.
2004. Prediction of Functional Sites by Analysis of Sequence and Structure Conservation. Protein Sci. 13:884-892. Abstract
Pubmed
2003
Sunyaev, S, Kondrashov FA, Bork P, Ramensky V.
2003. Impact of Selection, Mutation rate and Genetic Drift on Human Genetic Variation. Hum Mol Genet. 12:3325-3330. Abstract
Pubmed
2002
Perelygin, AA, Kondrashov FA, Rogozin IB, Brinton MA.
2002. Evolution of the Mouse polyubiquitin-C gene. J Mol Evol. 55:202-210. Abstract
Pubmed
Castillo-Davis, CI, Mekhedov SL, Hartl DL, Koonin EV, Kondrashov FA.
2002. Selection for Short Introns in Highly Expressed Genes. Nat Genet. 31:415-418. Abstract
Pubmed
Kondrashov, FA, Rogozin IB, Wolf YI, Koonin EV.
2002. Selection in the Evolution of gene Duplications. Genome Biol. 3:RESEARCH0008-RESEARCH0008. Abstract
Kondrashov, AS, Sunyaev S, Kondrashov FA.
2002. Dobzhansky-Muller Incompatibilities in Protein Evolution. Proc Natl Acad Sci U S A. 99:14878-14883. Abstract
Pubmed
2001
Rogozin, I, Kondrashov FA, Glazko G.
2001. Use of Mutation Spectra Analysis Software. Hum Mutat. 17:83-8102. Abstract
Pubmed
Kondrashov, FA, Kondrashov AS.
2001. Multidimensional Epistasis and the Disadvantage of sex. Proc Natl Acad Sci U S A. 98:12089-12092. Abstract
Pubmed
Kondrashov, FA, Koonin EV.
2001. Origin of Alternative Splicing by Tandem exon Duplication. Hum Mol Genet. 10:2661-2669. Abstract
Pubmed
Wolf, YI, Kondrashov FA, Koonin EV.
2001. Footprints of Primordial Introns on the Eukaryotic Genome: Still no Clear Traces. Trends Genet. 17:499-501.
Pubmed
2000
Wolf, YI, Kondrashov FA, Koonin EV.
2000. No Footprints of Primordial Introns in a Eukaryotic Genome. Trends Genet. 16:333-334.
Pubmed
1999
Kondrashov, AS, Kondrashov FA.
1999. Interactions Among Quantitative Traits in the Course of Sympatric Speciation. Nature. 400:351-354. Abstract
Pubmed
