Publications

2011

Rius, J, Cores F, Solsona F, van Hemert JI., Koetsier J, Notredame C.  2011.  A user-friendly web portal for T-Coffee on supercomputers.. BMC Bioinformatics. 12:150. Abstract
Pubmed
Di Tommaso, P, Moretti S, Xenarios I, Orobitg M, Montanyola A, Chang JM., Taly JF., Notredame C.  2011.  T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.. Nucleic Acids Res.. 39:W13–W17. Abstract
Pubmed
Bussotti, G, Raineri E, Erb I, Zytnicki M, Wilm A, Beaudoing E, Bucher P, Notredame C.  2011.  BlastR–fast and accurate database searches for non-coding RNAs.. Nucleic acids research. Abstract
Pubmed
Di Tommaso, P, Moretti S, Xenarios I, Orobitg M, Montanyola A, Chang JM., Taly JF., Notredame C.  2011.  T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.. Nucleic acids research. Abstract
Pubmed

2010

Lingner, T, Mühlhausen S, Gabaldón T, Notredame C, Meinicke P.  2010.  Predicting phenotypic traits of prokaryotes from protein domain frequencies.. BMC Bioinformatics. 11:481. Abstract
Pubmed
Ørom, UA., Derrien T, Beringer M, Gumireddy K, Gardini A, Bussotti G, Lai F, Zytnicki M, Notredame C, Huang Q et al..  2010.  Long noncoding RNAs with enhancer-like function in human cells.. Cell. 143:46–58. Abstract
Pubmed
Magis, C, Stricher F, van der Sloot AM., Serrano L, Notredame C.  2010.  T-RMSD: a fine-grained, structure-based classification method and its application to the functional characterization of TNF receptors.. J. Mol. Biol.. 400:605–617. Abstract
Pubmed
Yau, WL., Blisnick T, Taly JF., Helmer-Citterich M, Schiene-Fischer C, Leclercq O, Li J, Schmidt-Arras D, Morales MA., Notredame C et al..  2010.  Cyclosporin A treatment of Leishmania donovani reveals stage-specific functions of cyclophilins in parasite proliferation and viability.. PLoS Negl Trop Dis. 4:e729. Abstract
Pubmed
Notredame, C.  2010.  Computing multiple sequence/structure alignments with the T-coffee package.. Curr Protoc Bioinformatics. Chapter 3:Unit3.8.1–Unit3.825. Abstract
Pubmed
Di Tommaso, P, Orobitg M, Guirado F, Cores F, Espinosa T, Notredame C.  2010.  Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud.. Bioinformatics. 26:1903–1904. Abstract
Pubmed
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Cedric Notredame

Cedric Notredame
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Joined: 2009-09-04

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