Genome Annotation

Selenoprofiles 3

Selenoprofiles 3

Gene Prediction/Genome Annotation

We are continually working on the development of geneid, an ab initio gene prediction program, and SGP2 a comparative gene finder. We currently have more than fifty parameter files for gene prediction in a wide range of species spanning all Kingdoms of life.

MetaPhOrs

MetaPhOrs

Sequence Mapping and Assembly Assessment Project (SMAAP): RGASP3/dnGASP

SMAAP (RGASP3/dnGASP) is a collaborative effort among researchers to compare and evaluate methods and strategies for de novo genome assembly and RNASeq read alignment using data from 2nd generation sequencing platforms.

Roderic Guigo of the CRG and Ivo Gut of the CNAG will be coordinating the upcoming RGASP3 project.

The rules and all current information concerning RGASP3 and dnGASP can be found on this page.

This project is a collaboration between the CRG, CNAG (Barcelona) and the Sanger Centre (Hixton, UK).

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